fix: Enforce min_chunk_size in RAG chunker
- Filter out chunks smaller than min_chunk_size (default 100 tokens) - Exception: Keep all chunks if entire document is smaller than target size - All 15 tests passing (100% pass rate) Fixes edge case where very small chunks (e.g., 'Short.' = 6 chars) were being created despite min_chunk_size=100 setting. Test: pytest tests/test_rag_chunker.py -v
This commit is contained in:
yusyus
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docs/DOCKER_DEPLOYMENT.md
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docs/DOCKER_DEPLOYMENT.md
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# Docker Deployment Guide
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Complete guide for deploying Skill Seekers using Docker.
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## Table of Contents
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- [Quick Start](#quick-start)
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- [Building Images](#building-images)
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||||
- [Running Containers](#running-containers)
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- [Docker Compose](#docker-compose)
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- [Configuration](#configuration)
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||||
- [Data Persistence](#data-persistence)
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||||
- [Networking](#networking)
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- [Monitoring](#monitoring)
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- [Troubleshooting](#troubleshooting)
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||||
|
||||
## Quick Start
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### Single Container Deployment
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```bash
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# Pull pre-built image (when available)
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docker pull skillseekers/skillseekers:latest
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# Or build locally
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docker build -t skillseekers:latest .
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# Run MCP server
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docker run -d \
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--name skillseekers-mcp \
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-p 8765:8765 \
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-e ANTHROPIC_API_KEY=$ANTHROPIC_API_KEY \
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-e GITHUB_TOKEN=$GITHUB_TOKEN \
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-v skillseekers-data:/app/data \
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--restart unless-stopped \
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skillseekers:latest
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```
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||||
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||||
### Multi-Service Deployment
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||||
|
||||
```bash
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# Start all services
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docker-compose up -d
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||||
|
||||
# Check status
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||||
docker-compose ps
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||||
|
||||
# View logs
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||||
docker-compose logs -f
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||||
```
|
||||
|
||||
## Building Images
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||||
|
||||
### 1. Production Image
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||||
|
||||
The Dockerfile uses multi-stage builds for optimization:
|
||||
|
||||
```dockerfile
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||||
# Build stage
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||||
FROM python:3.12-slim as builder
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||||
WORKDIR /build
|
||||
COPY requirements.txt .
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||||
RUN pip install --user --no-cache-dir -r requirements.txt
|
||||
|
||||
# Runtime stage
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FROM python:3.12-slim
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WORKDIR /app
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||||
COPY --from=builder /root/.local /root/.local
|
||||
COPY . .
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ENV PATH=/root/.local/bin:$PATH
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||||
CMD ["python", "-m", "skill_seekers.mcp.server_fastmcp"]
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||||
```
|
||||
|
||||
**Build the image:**
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||||
|
||||
```bash
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||||
# Standard build
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||||
docker build -t skillseekers:latest .
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||||
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||||
# Build with specific features
|
||||
docker build \
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||||
--build-arg INSTALL_EXTRAS="all-llms,embedding" \
|
||||
-t skillseekers:full \
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||||
.
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||||
|
||||
# Build with cache
|
||||
docker build \
|
||||
--cache-from skillseekers:latest \
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||||
-t skillseekers:v2.9.0 \
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||||
.
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||||
```
|
||||
|
||||
### 2. Development Image
|
||||
|
||||
```dockerfile
|
||||
# Dockerfile.dev
|
||||
FROM python:3.12
|
||||
WORKDIR /app
|
||||
RUN pip install -e ".[dev]"
|
||||
COPY . .
|
||||
CMD ["python", "-m", "skill_seekers.mcp.server_fastmcp", "--reload"]
|
||||
```
|
||||
|
||||
**Build and run:**
|
||||
|
||||
```bash
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||||
docker build -f Dockerfile.dev -t skillseekers:dev .
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||||
|
||||
docker run -it \
|
||||
--name skillseekers-dev \
|
||||
-p 8765:8765 \
|
||||
-v $(pwd):/app \
|
||||
skillseekers:dev
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||||
```
|
||||
|
||||
### 3. Image Optimization
|
||||
|
||||
**Reduce image size:**
|
||||
|
||||
```bash
|
||||
# Multi-stage build
|
||||
FROM python:3.12-slim as builder
|
||||
...
|
||||
FROM python:3.12-alpine # Smaller base
|
||||
|
||||
# Remove build dependencies
|
||||
RUN pip install --no-cache-dir ... && \
|
||||
rm -rf /root/.cache
|
||||
|
||||
# Use .dockerignore
|
||||
echo ".git" >> .dockerignore
|
||||
echo "tests/" >> .dockerignore
|
||||
echo "*.pyc" >> .dockerignore
|
||||
```
|
||||
|
||||
**Layer caching:**
|
||||
|
||||
```dockerfile
|
||||
# Copy requirements first (changes less frequently)
|
||||
COPY requirements.txt .
|
||||
RUN pip install -r requirements.txt
|
||||
|
||||
# Copy code later (changes more frequently)
|
||||
COPY . .
|
||||
```
|
||||
|
||||
## Running Containers
|
||||
|
||||
### 1. MCP Server
|
||||
|
||||
```bash
|
||||
# HTTP transport (recommended for production)
|
||||
docker run -d \
|
||||
--name skillseekers-mcp \
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||||
-p 8765:8765 \
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||||
-e MCP_TRANSPORT=http \
|
||||
-e MCP_PORT=8765 \
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||||
-e ANTHROPIC_API_KEY=$ANTHROPIC_API_KEY \
|
||||
-v skillseekers-data:/app/data \
|
||||
--restart unless-stopped \
|
||||
skillseekers:latest
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||||
|
||||
# stdio transport (for local tools)
|
||||
docker run -it \
|
||||
--name skillseekers-stdio \
|
||||
-e MCP_TRANSPORT=stdio \
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||||
skillseekers:latest
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||||
```
|
||||
|
||||
### 2. Embedding Server
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||||
|
||||
```bash
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||||
docker run -d \
|
||||
--name skillseekers-embed \
|
||||
-p 8000:8000 \
|
||||
-e OPENAI_API_KEY=$OPENAI_API_KEY \
|
||||
-e VOYAGE_API_KEY=$VOYAGE_API_KEY \
|
||||
-v skillseekers-cache:/app/cache \
|
||||
--restart unless-stopped \
|
||||
skillseekers:latest \
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||||
python -m skill_seekers.embedding.server --host 0.0.0.0 --port 8000
|
||||
```
|
||||
|
||||
### 3. Sync Monitor
|
||||
|
||||
```bash
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||||
docker run -d \
|
||||
--name skillseekers-sync \
|
||||
-e SYNC_WEBHOOK_URL=$SYNC_WEBHOOK_URL \
|
||||
-v skillseekers-configs:/app/configs \
|
||||
--restart unless-stopped \
|
||||
skillseekers:latest \
|
||||
skill-seekers-sync start --config configs/react.json
|
||||
```
|
||||
|
||||
### 4. Interactive Commands
|
||||
|
||||
```bash
|
||||
# Run scraping
|
||||
docker run --rm \
|
||||
-e GITHUB_TOKEN=$GITHUB_TOKEN \
|
||||
-v $(pwd)/output:/app/output \
|
||||
skillseekers:latest \
|
||||
skill-seekers scrape --config configs/react.json
|
||||
|
||||
# Generate skill
|
||||
docker run --rm \
|
||||
-v $(pwd)/output:/app/output \
|
||||
skillseekers:latest \
|
||||
skill-seekers package output/react/
|
||||
|
||||
# Interactive shell
|
||||
docker run --rm -it \
|
||||
skillseekers:latest \
|
||||
/bin/bash
|
||||
```
|
||||
|
||||
## Docker Compose
|
||||
|
||||
### 1. Basic Setup
|
||||
|
||||
**docker-compose.yml:**
|
||||
|
||||
```yaml
|
||||
version: '3.8'
|
||||
|
||||
services:
|
||||
mcp-server:
|
||||
image: skillseekers:latest
|
||||
container_name: skillseekers-mcp
|
||||
ports:
|
||||
- "8765:8765"
|
||||
environment:
|
||||
- MCP_TRANSPORT=http
|
||||
- MCP_PORT=8765
|
||||
- ANTHROPIC_API_KEY=${ANTHROPIC_API_KEY}
|
||||
- GITHUB_TOKEN=${GITHUB_TOKEN}
|
||||
- LOG_LEVEL=INFO
|
||||
volumes:
|
||||
- skillseekers-data:/app/data
|
||||
- skillseekers-logs:/app/logs
|
||||
restart: unless-stopped
|
||||
healthcheck:
|
||||
test: ["CMD", "curl", "-f", "http://localhost:8765/health"]
|
||||
interval: 30s
|
||||
timeout: 10s
|
||||
retries: 3
|
||||
start_period: 40s
|
||||
|
||||
embedding-server:
|
||||
image: skillseekers:latest
|
||||
container_name: skillseekers-embed
|
||||
ports:
|
||||
- "8000:8000"
|
||||
environment:
|
||||
- OPENAI_API_KEY=${OPENAI_API_KEY}
|
||||
- VOYAGE_API_KEY=${VOYAGE_API_KEY}
|
||||
volumes:
|
||||
- skillseekers-cache:/app/cache
|
||||
command: ["python", "-m", "skill_seekers.embedding.server", "--host", "0.0.0.0"]
|
||||
restart: unless-stopped
|
||||
healthcheck:
|
||||
test: ["CMD", "curl", "-f", "http://localhost:8000/health"]
|
||||
interval: 30s
|
||||
|
||||
nginx:
|
||||
image: nginx:alpine
|
||||
container_name: skillseekers-nginx
|
||||
ports:
|
||||
- "80:80"
|
||||
- "443:443"
|
||||
volumes:
|
||||
- ./nginx.conf:/etc/nginx/nginx.conf:ro
|
||||
- ./certs:/etc/nginx/certs:ro
|
||||
depends_on:
|
||||
- mcp-server
|
||||
- embedding-server
|
||||
restart: unless-stopped
|
||||
|
||||
volumes:
|
||||
skillseekers-data:
|
||||
skillseekers-logs:
|
||||
skillseekers-cache:
|
||||
```
|
||||
|
||||
### 2. With Monitoring Stack
|
||||
|
||||
**docker-compose.monitoring.yml:**
|
||||
|
||||
```yaml
|
||||
version: '3.8'
|
||||
|
||||
services:
|
||||
# ... (previous services)
|
||||
|
||||
prometheus:
|
||||
image: prom/prometheus:latest
|
||||
container_name: skillseekers-prometheus
|
||||
ports:
|
||||
- "9090:9090"
|
||||
volumes:
|
||||
- ./prometheus.yml:/etc/prometheus/prometheus.yml:ro
|
||||
- prometheus-data:/prometheus
|
||||
command:
|
||||
- '--config.file=/etc/prometheus/prometheus.yml'
|
||||
- '--storage.tsdb.path=/prometheus'
|
||||
restart: unless-stopped
|
||||
|
||||
grafana:
|
||||
image: grafana/grafana:latest
|
||||
container_name: skillseekers-grafana
|
||||
ports:
|
||||
- "3000:3000"
|
||||
environment:
|
||||
- GF_SECURITY_ADMIN_PASSWORD=${GRAFANA_PASSWORD:-admin}
|
||||
volumes:
|
||||
- grafana-data:/var/lib/grafana
|
||||
- ./grafana/dashboards:/etc/grafana/provisioning/dashboards:ro
|
||||
restart: unless-stopped
|
||||
|
||||
loki:
|
||||
image: grafana/loki:latest
|
||||
container_name: skillseekers-loki
|
||||
ports:
|
||||
- "3100:3100"
|
||||
volumes:
|
||||
- loki-data:/loki
|
||||
restart: unless-stopped
|
||||
|
||||
volumes:
|
||||
prometheus-data:
|
||||
grafana-data:
|
||||
loki-data:
|
||||
```
|
||||
|
||||
### 3. Commands
|
||||
|
||||
```bash
|
||||
# Start services
|
||||
docker-compose up -d
|
||||
|
||||
# Start with monitoring
|
||||
docker-compose -f docker-compose.yml -f docker-compose.monitoring.yml up -d
|
||||
|
||||
# Check status
|
||||
docker-compose ps
|
||||
|
||||
# View logs
|
||||
docker-compose logs -f mcp-server
|
||||
|
||||
# Scale services
|
||||
docker-compose up -d --scale mcp-server=3
|
||||
|
||||
# Stop services
|
||||
docker-compose down
|
||||
|
||||
# Stop and remove volumes
|
||||
docker-compose down -v
|
||||
```
|
||||
|
||||
## Configuration
|
||||
|
||||
### 1. Environment Variables
|
||||
|
||||
**Using .env file:**
|
||||
|
||||
```bash
|
||||
# .env
|
||||
ANTHROPIC_API_KEY=sk-ant-...
|
||||
GITHUB_TOKEN=ghp_...
|
||||
OPENAI_API_KEY=sk-...
|
||||
VOYAGE_API_KEY=...
|
||||
LOG_LEVEL=INFO
|
||||
MCP_PORT=8765
|
||||
```
|
||||
|
||||
**Load in docker-compose:**
|
||||
|
||||
```yaml
|
||||
services:
|
||||
mcp-server:
|
||||
env_file:
|
||||
- .env
|
||||
```
|
||||
|
||||
### 2. Config Files
|
||||
|
||||
**Mount configuration:**
|
||||
|
||||
```bash
|
||||
docker run -d \
|
||||
-v $(pwd)/configs:/app/configs:ro \
|
||||
skillseekers:latest
|
||||
```
|
||||
|
||||
**docker-compose.yml:**
|
||||
|
||||
```yaml
|
||||
services:
|
||||
mcp-server:
|
||||
volumes:
|
||||
- ./configs:/app/configs:ro
|
||||
```
|
||||
|
||||
### 3. Secrets Management
|
||||
|
||||
**Docker Secrets (Swarm mode):**
|
||||
|
||||
```bash
|
||||
# Create secrets
|
||||
echo $ANTHROPIC_API_KEY | docker secret create anthropic_key -
|
||||
echo $GITHUB_TOKEN | docker secret create github_token -
|
||||
|
||||
# Use in service
|
||||
docker service create \
|
||||
--name skillseekers-mcp \
|
||||
--secret anthropic_key \
|
||||
--secret github_token \
|
||||
skillseekers:latest
|
||||
```
|
||||
|
||||
**docker-compose.yml (Swarm):**
|
||||
|
||||
```yaml
|
||||
version: '3.8'
|
||||
|
||||
secrets:
|
||||
anthropic_key:
|
||||
external: true
|
||||
github_token:
|
||||
external: true
|
||||
|
||||
services:
|
||||
mcp-server:
|
||||
secrets:
|
||||
- anthropic_key
|
||||
- github_token
|
||||
environment:
|
||||
- ANTHROPIC_API_KEY_FILE=/run/secrets/anthropic_key
|
||||
```
|
||||
|
||||
## Data Persistence
|
||||
|
||||
### 1. Named Volumes
|
||||
|
||||
```bash
|
||||
# Create volume
|
||||
docker volume create skillseekers-data
|
||||
|
||||
# Use in container
|
||||
docker run -v skillseekers-data:/app/data skillseekers:latest
|
||||
|
||||
# Backup volume
|
||||
docker run --rm \
|
||||
-v skillseekers-data:/data \
|
||||
-v $(pwd):/backup \
|
||||
alpine \
|
||||
tar czf /backup/backup.tar.gz /data
|
||||
|
||||
# Restore volume
|
||||
docker run --rm \
|
||||
-v skillseekers-data:/data \
|
||||
-v $(pwd):/backup \
|
||||
alpine \
|
||||
sh -c "cd /data && tar xzf /backup/backup.tar.gz --strip 1"
|
||||
```
|
||||
|
||||
### 2. Bind Mounts
|
||||
|
||||
```bash
|
||||
# Mount host directory
|
||||
docker run -v /opt/skillseekers/output:/app/output skillseekers:latest
|
||||
|
||||
# Read-only mount
|
||||
docker run -v $(pwd)/configs:/app/configs:ro skillseekers:latest
|
||||
```
|
||||
|
||||
### 3. Data Migration
|
||||
|
||||
```bash
|
||||
# Export from container
|
||||
docker cp skillseekers-mcp:/app/data ./data-backup
|
||||
|
||||
# Import to new container
|
||||
docker cp ./data-backup new-container:/app/data
|
||||
```
|
||||
|
||||
## Networking
|
||||
|
||||
### 1. Bridge Network (Default)
|
||||
|
||||
```bash
|
||||
# Containers can communicate by name
|
||||
docker network create skillseekers-net
|
||||
|
||||
docker run --network skillseekers-net skillseekers:latest
|
||||
```
|
||||
|
||||
### 2. Host Network
|
||||
|
||||
```bash
|
||||
# Use host network stack
|
||||
docker run --network host skillseekers:latest
|
||||
```
|
||||
|
||||
### 3. Custom Network
|
||||
|
||||
**docker-compose.yml:**
|
||||
|
||||
```yaml
|
||||
networks:
|
||||
frontend:
|
||||
driver: bridge
|
||||
backend:
|
||||
driver: bridge
|
||||
internal: true # No external access
|
||||
|
||||
services:
|
||||
nginx:
|
||||
networks:
|
||||
- frontend
|
||||
|
||||
mcp-server:
|
||||
networks:
|
||||
- frontend
|
||||
- backend
|
||||
|
||||
database:
|
||||
networks:
|
||||
- backend
|
||||
```
|
||||
|
||||
## Monitoring
|
||||
|
||||
### 1. Health Checks
|
||||
|
||||
```yaml
|
||||
services:
|
||||
mcp-server:
|
||||
healthcheck:
|
||||
test: ["CMD", "curl", "-f", "http://localhost:8765/health"]
|
||||
interval: 30s
|
||||
timeout: 10s
|
||||
retries: 3
|
||||
start_period: 40s
|
||||
```
|
||||
|
||||
### 2. Resource Limits
|
||||
|
||||
```yaml
|
||||
services:
|
||||
mcp-server:
|
||||
deploy:
|
||||
resources:
|
||||
limits:
|
||||
cpus: '2.0'
|
||||
memory: 4G
|
||||
reservations:
|
||||
cpus: '1.0'
|
||||
memory: 2G
|
||||
```
|
||||
|
||||
### 3. Logging
|
||||
|
||||
```yaml
|
||||
services:
|
||||
mcp-server:
|
||||
logging:
|
||||
driver: "json-file"
|
||||
options:
|
||||
max-size: "10m"
|
||||
max-file: "3"
|
||||
labels: "service=mcp"
|
||||
|
||||
# Or use syslog
|
||||
logging:
|
||||
driver: "syslog"
|
||||
options:
|
||||
syslog-address: "udp://192.168.1.100:514"
|
||||
```
|
||||
|
||||
### 4. Metrics
|
||||
|
||||
```bash
|
||||
# Docker stats
|
||||
docker stats skillseekers-mcp
|
||||
|
||||
# cAdvisor for metrics
|
||||
docker run -d \
|
||||
--name cadvisor \
|
||||
-p 8080:8080 \
|
||||
-v /:/rootfs:ro \
|
||||
-v /var/run:/var/run:ro \
|
||||
-v /sys:/sys:ro \
|
||||
-v /var/lib/docker:/var/lib/docker:ro \
|
||||
gcr.io/cadvisor/cadvisor:latest
|
||||
```
|
||||
|
||||
## Troubleshooting
|
||||
|
||||
### Common Issues
|
||||
|
||||
#### 1. Container Won't Start
|
||||
|
||||
```bash
|
||||
# Check logs
|
||||
docker logs skillseekers-mcp
|
||||
|
||||
# Inspect container
|
||||
docker inspect skillseekers-mcp
|
||||
|
||||
# Run with interactive shell
|
||||
docker run -it --entrypoint /bin/bash skillseekers:latest
|
||||
```
|
||||
|
||||
#### 2. Port Already in Use
|
||||
|
||||
```bash
|
||||
# Find process using port
|
||||
sudo lsof -i :8765
|
||||
|
||||
# Kill process
|
||||
kill -9 <PID>
|
||||
|
||||
# Or use different port
|
||||
docker run -p 8766:8765 skillseekers:latest
|
||||
```
|
||||
|
||||
#### 3. Volume Permission Issues
|
||||
|
||||
```bash
|
||||
# Run as specific user
|
||||
docker run --user $(id -u):$(id -g) skillseekers:latest
|
||||
|
||||
# Fix permissions
|
||||
docker run --rm \
|
||||
-v skillseekers-data:/data \
|
||||
alpine chown -R 1000:1000 /data
|
||||
```
|
||||
|
||||
#### 4. Network Connectivity
|
||||
|
||||
```bash
|
||||
# Test connectivity
|
||||
docker exec skillseekers-mcp ping google.com
|
||||
|
||||
# Check DNS
|
||||
docker exec skillseekers-mcp cat /etc/resolv.conf
|
||||
|
||||
# Use custom DNS
|
||||
docker run --dns 8.8.8.8 skillseekers:latest
|
||||
```
|
||||
|
||||
#### 5. High Memory Usage
|
||||
|
||||
```bash
|
||||
# Set memory limit
|
||||
docker run --memory=4g skillseekers:latest
|
||||
|
||||
# Check memory usage
|
||||
docker stats skillseekers-mcp
|
||||
|
||||
# Enable memory swappiness
|
||||
docker run --memory=4g --memory-swap=8g skillseekers:latest
|
||||
```
|
||||
|
||||
### Debug Commands
|
||||
|
||||
```bash
|
||||
# Enter running container
|
||||
docker exec -it skillseekers-mcp /bin/bash
|
||||
|
||||
# View environment variables
|
||||
docker exec skillseekers-mcp env
|
||||
|
||||
# Check processes
|
||||
docker exec skillseekers-mcp ps aux
|
||||
|
||||
# View logs in real-time
|
||||
docker logs -f --tail 100 skillseekers-mcp
|
||||
|
||||
# Inspect container details
|
||||
docker inspect skillseekers-mcp | jq '.[]'
|
||||
|
||||
# Export container filesystem
|
||||
docker export skillseekers-mcp > container.tar
|
||||
```
|
||||
|
||||
## Production Best Practices
|
||||
|
||||
### 1. Image Management
|
||||
|
||||
```bash
|
||||
# Tag images with versions
|
||||
docker build -t skillseekers:2.9.0 .
|
||||
docker tag skillseekers:2.9.0 skillseekers:latest
|
||||
|
||||
# Use private registry
|
||||
docker tag skillseekers:latest registry.example.com/skillseekers:latest
|
||||
docker push registry.example.com/skillseekers:latest
|
||||
|
||||
# Scan for vulnerabilities
|
||||
docker scan skillseekers:latest
|
||||
```
|
||||
|
||||
### 2. Security
|
||||
|
||||
```bash
|
||||
# Run as non-root user
|
||||
RUN useradd -m -s /bin/bash skillseekers
|
||||
USER skillseekers
|
||||
|
||||
# Read-only root filesystem
|
||||
docker run --read-only --tmpfs /tmp skillseekers:latest
|
||||
|
||||
# Drop capabilities
|
||||
docker run --cap-drop=ALL --cap-add=NET_BIND_SERVICE skillseekers:latest
|
||||
|
||||
# Use security scanning
|
||||
trivy image skillseekers:latest
|
||||
```
|
||||
|
||||
### 3. Resource Management
|
||||
|
||||
```yaml
|
||||
services:
|
||||
mcp-server:
|
||||
# CPU limits
|
||||
cpus: 2.0
|
||||
cpu_shares: 1024
|
||||
|
||||
# Memory limits
|
||||
mem_limit: 4g
|
||||
memswap_limit: 8g
|
||||
mem_reservation: 2g
|
||||
|
||||
# Process limits
|
||||
pids_limit: 200
|
||||
```
|
||||
|
||||
### 4. Backup & Recovery
|
||||
|
||||
```bash
|
||||
# Backup script
|
||||
#!/bin/bash
|
||||
docker-compose down
|
||||
tar czf backup-$(date +%Y%m%d).tar.gz volumes/
|
||||
docker-compose up -d
|
||||
|
||||
# Automated backups
|
||||
0 2 * * * /opt/skillseekers/backup.sh
|
||||
```
|
||||
|
||||
## Next Steps
|
||||
|
||||
- See [KUBERNETES_DEPLOYMENT.md](./KUBERNETES_DEPLOYMENT.md) for Kubernetes deployment
|
||||
- Review [PRODUCTION_DEPLOYMENT.md](./PRODUCTION_DEPLOYMENT.md) for general production guidelines
|
||||
- Check [TROUBLESHOOTING.md](./TROUBLESHOOTING.md) for common issues
|
||||
|
||||
---
|
||||
|
||||
**Need help?** Open an issue on [GitHub](https://github.com/yusufkaraaslan/Skill_Seekers/issues).
|
||||
Reference in New Issue
Block a user