fix: Resolve 21 ruff linting errors (SIM102, SIM117, B904, SIM113, B007)

Fixed all 21 linting errors identified in GitHub Actions:

SIM102 (7 errors - nested if statements):
- config_extractor.py:468 - Combined nested conditions
- config_validator.py (was B904, already fixed)
- pattern_recognizer.py:430,538,916 - Combined nested conditions
- test_example_extractor.py:365,412,460 - Combined nested conditions
- unified_skill_builder.py:1070 - Combined nested conditions

SIM117 (9 errors - multiple with statements):
- test_install_agent.py:418 - Combined with statements
- test_issue_219_e2e.py:278 - Combined with statements
- test_llms_txt_downloader.py:33,88 - Combined with statements
- test_skip_llms_txt.py:75,98,121,148,172,304 - Combined with statements

B904 (1 error - exception handling):
- config_validator.py:62 - Added 'from e' to exception chain

SIM113 (1 error - enumerate usage):
- doc_scraper.py:1068 - Removed unused 'completed' counter variable

B007 (1 error - unused loop variable):
- pdf_scraper.py:167 - Changed 'keywords' to '_' for unused variable

All changes improve code quality without altering functionality.
Tests: 1214 passed, 167 skipped (4 pre-existing failures unrelated)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

src/skill_seekers/cli/unified_skill_builder.py

@@ -1067,11 +1067,10 @@ This skill combines knowledge from multiple sources:
                 languages = c3_data["architecture"].get("languages", {})
 
             # If no languages from C3.7, try to get from GitHub data
-            if not languages:
-                # github_data already available from method scope
-                if github_data.get("languages"):
-                    # GitHub data has languages as list, convert to dict with count 1
-                    languages = dict.fromkeys(github_data["languages"], 1)
+            # github_data already available from method scope
+            if not languages and github_data.get("languages"):
+                # GitHub data has languages as list, convert to dict with count 1
+                languages = dict.fromkeys(github_data["languages"], 1)
 
             if languages:
                 f.write("**Languages Detected**:\n")