feat: Update MCP to use server_fastmcp with venv Python support
This PR improves MCP server configuration by updating all documentation to use the current server_fastmcp module and ensuring setup scripts automatically use virtual environment Python instead of system Python. ## Changes ### 1. Documentation Updates (server → server_fastmcp) Updated all references from deprecated `server` module to `server_fastmcp`: **User-facing documentation:** - examples/http_transport_examples.sh: All 13 command examples - README.md: Configuration examples and troubleshooting commands - docs/guides/MCP_SETUP.md: Enhanced migration guide with stdio/HTTP examples - docs/guides/TESTING_GUIDE.md: Test import statements - docs/guides/MULTI_AGENT_SETUP.md: Updated examples - docs/guides/SETUP_QUICK_REFERENCE.md: Updated paths - CLAUDE.md: CLI command examples **MCP module:** - src/skill_seekers/mcp/README.md: Updated config examples - src/skill_seekers/mcp/agent_detector.py: Use server_fastmcp module Note: Historical release notes (CHANGELOG.md) preserved unchanged. ### 2. Venv Python Configuration **setup_mcp.sh improvements:** - Added automatic venv detection (checks .venv, venv, and $VIRTUAL_ENV) - Sets PYTHON_CMD to venv Python path when available - **CRITICAL FIX**: Now updates PYTHON_CMD after creating/activating venv - Generates MCP configs with full venv Python path - Falls back to system python3 if no venv found - Displays detected Python version and path **Config examples updated:** - .claude/mcp_config.example.json: Use venv Python path - example-mcp-config.json: Use venv Python path - Added "type": "stdio" for clarity - Updated to use server_fastmcp module ### 3. Bug Fix: PYTHON_CMD Not Updated After Venv Creation Previously, when setup_mcp.sh created or activated a venv, it failed to update PYTHON_CMD, causing generated configs to still use system python3. **Fixed cases:** - When $VIRTUAL_ENV is already set → Update PYTHON_CMD to venv Python - When existing venv is activated → Set PYTHON_CMD="$REPO_PATH/venv/bin/python3" - When new venv is created → Set PYTHON_CMD="$REPO_PATH/venv/bin/python3" ## Benefits ### For Users: ✅ No deprecation warnings - All docs show current module ✅ Proper Python environment - MCP uses venv with all dependencies ✅ No system Python issues - Avoids "module not found" errors ✅ No global installation needed - No --break-system-packages required ✅ Automatic detection - setup_mcp.sh finds venv automatically ✅ Clean isolation - Projects don't interfere with system Python ### For Maintainers: ✅ Prepared for v3.0.0 - Documentation ready for server.py removal ✅ Reduced support burden - Fewer MCP configuration issues ✅ Consistent examples - All docs use same module/pattern ## Testing **Verified:** - ✅ All command examples use server_fastmcp - ✅ No deprecated module references in user-facing docs (0 results) - ✅ New module correctly referenced (129 instances) - ✅ setup_mcp.sh detects venv and generates correct config - ✅ PYTHON_CMD properly updated after venv creation - ✅ MCP server starts correctly with venv Python **Files changed:** 12 files (+262/-107 lines) 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
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@@ -12,57 +12,57 @@
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python -m skill_seekers.mcp.server_fastmcp
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# HTTP transport on default port 8000
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python -m skill_seekers.mcp.server_fastmcp --http
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python -m skill_seekers.mcp.server_fastmcp --transport http
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# =============================================================================
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# CUSTOM PORT
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# =============================================================================
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# HTTP transport on port 3000
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python -m skill_seekers.mcp.server_fastmcp --http --port 3000
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python -m skill_seekers.mcp.server_fastmcp --transport http --port 3000
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# HTTP transport on port 8080
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python -m skill_seekers.mcp.server_fastmcp --http --port 8080
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python -m skill_seekers.mcp.server_fastmcp --transport http --port 8080
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# =============================================================================
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# CUSTOM HOST
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# =============================================================================
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# Listen on all interfaces (⚠️ use with caution in production!)
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python -m skill_seekers.mcp.server_fastmcp --http --host 0.0.0.0
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python -m skill_seekers.mcp.server_fastmcp --transport http --host 0.0.0.0
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# Listen on specific interface
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python -m skill_seekers.mcp.server_fastmcp --http --host 192.168.1.100
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python -m skill_seekers.mcp.server_fastmcp --transport http --host 192.168.1.100
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# =============================================================================
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# LOGGING
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# =============================================================================
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# Debug logging
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python -m skill_seekers.mcp.server_fastmcp --http --log-level DEBUG
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python -m skill_seekers.mcp.server_fastmcp --transport http --log-level DEBUG
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# Warning level only
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python -m skill_seekers.mcp.server_fastmcp --http --log-level WARNING
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python -m skill_seekers.mcp.server_fastmcp --transport http --log-level WARNING
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# Error level only
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python -m skill_seekers.mcp.server_fastmcp --http --log-level ERROR
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python -m skill_seekers.mcp.server_fastmcp --transport http --log-level ERROR
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# =============================================================================
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# COMBINED OPTIONS
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# =============================================================================
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# HTTP on port 8080 with debug logging
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python -m skill_seekers.mcp.server_fastmcp --http --port 8080 --log-level DEBUG
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python -m skill_seekers.mcp.server_fastmcp --transport http --port 8080 --log-level DEBUG
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# HTTP on all interfaces with custom port and warning level
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python -m skill_seekers.mcp.server_fastmcp --http --host 0.0.0.0 --port 9000 --log-level WARNING
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python -m skill_seekers.mcp.server_fastmcp --transport http --host 0.0.0.0 --port 9000 --log-level WARNING
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# =============================================================================
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# TESTING
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# =============================================================================
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# Start server in background and test health endpoint
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python -m skill_seekers.mcp.server_fastmcp --http --port 8765 &
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python -m skill_seekers.mcp.server_fastmcp --transport http --port 8765 &
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SERVER_PID=$!
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sleep 2
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curl http://localhost:8765/health | python -m json.tool
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@@ -117,4 +117,4 @@ curl http://localhost:8000/health
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curl -v http://localhost:8000/health
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# Follow server logs
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python -m skill_seekers.mcp.server_fastmcp --http --log-level DEBUG 2>&1 | tee server.log
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python -m skill_seekers.mcp.server_fastmcp --transport http --log-level DEBUG 2>&1 | tee server.log
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