10 Commits

Author SHA1 Message Date
yusyus
6d37e43b83 feat: Grand Unification — one command, one interface, direct converters (#346)
* fix: resolve 8 pipeline bugs found during skill quality review

- Fix 0 APIs extracted from documentation by enriching summary.json
  with individual page file content before conflict detection
- Fix all "Unknown" entries in merged_api.md by injecting dict keys
  as API names and falling back to AI merger field names
- Fix frontmatter using raw slugs instead of config name by
  normalizing frontmatter after SKILL.md generation
- Fix leaked absolute filesystem paths in patterns/index.md by
  stripping .skillseeker-cache repo clone prefixes
- Fix ARCHITECTURE.md file count always showing "1 files" by
  counting files per language from code_analysis data
- Fix YAML parse errors on GitHub Actions workflows by converting
  boolean keys (on: true) to strings
- Fix false React/Vue.js framework detection in C# projects by
  filtering web frameworks based on primary language
- Improve how-to guide generation by broadening workflow example
  filter to include setup/config examples with sufficient complexity
- Fix test_git_sources_e2e failures caused by git init default
  branch being 'main' instead of 'master'

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: address 6 review issues in ExecutionContext implementation

Fixes from code review:

1. Mode resolution (#3 critical): _args_to_data no longer unconditionally
   overwrites mode. Only writes mode="api" when --api-key explicitly passed.
   Env-var-based mode detection moved to _default_data() as lowest priority.

2. Re-initialization warning (#4): initialize() now logs debug message
   when called a second time instead of silently returning stale instance.

3. _raw_args preserved in override (#5): temp context now copies _raw_args
   from parent so get_raw() works correctly inside override blocks.

4. test_local_mode_detection env cleanup (#7): test now saves/restores
   API key env vars to prevent failures when ANTHROPIC_API_KEY is set.

5. _load_config_file error handling (#8): wraps FileNotFoundError and
   JSONDecodeError with user-friendly ValueError messages.

6. Lint fixes: added logging import, fixed Generator import from
   collections.abc, fixed AgentClient return type annotation.

Remaining P2/P3 items (documented, not blocking):
- Lock TOCTOU in override() — safe on CPython, needs fix for no-GIL
- get() reads _instance without lock — same CPython caveat
- config_path not stored on instance
- AnalysisSettings.depth not Literal constrained

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: address all remaining P2/P3 review issues in ExecutionContext

1. Thread safety: get() now acquires _lock before reading _instance (#2)
2. Thread safety: override() saves/restores _initialized flag to prevent
   re-init during override blocks (#10)
3. Config path stored: _config_path PrivateAttr + config_path property (#6)
4. Literal validation: AnalysisSettings.depth now uses
   Literal["surface", "deep", "full"] — rejects invalid values (#9)
5. Test updated: test_analysis_depth_choices now expects ValidationError
   for invalid depth, added test_analysis_depth_valid_choices
6. Lint cleanup: removed unused imports, fixed whitespace in tests

All 10 previously reported issues now resolved.
26 tests pass, lint clean.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: restore 5 truncated scrapers, migrate unified_scraper, fix context init

5 scrapers had main() truncated with "# Original main continues here..."
after Kimi's migration — business logic was never connected:
- html_scraper.py — restored HtmlToSkillConverter extraction + build
- pptx_scraper.py — restored PptxToSkillConverter extraction + build
- confluence_scraper.py — restored ConfluenceToSkillConverter with 3 modes
- notion_scraper.py — restored NotionToSkillConverter with 4 sources
- chat_scraper.py — restored ChatToSkillConverter extraction + build

unified_scraper.py — migrated main() to context-first pattern with argv fallback

Fixed context initialization chain:
- main.py no longer initializes ExecutionContext (was stealing init from commands)
- create_command.py now passes config_path from source_info.parsed
- execution_context.py handles SourceInfo.raw_input (not raw_source)

All 18 scrapers now genuinely migrated. 26 tests pass, lint clean.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: resolve 7 data flow conflicts between ExecutionContext and legacy paths

Critical fixes (CLI args silently lost):
- unified_scraper Phase 6: reads ctx.enhancement.level instead of raw JSON
  when args=None (#3, #4)
- unified_scraper Phase 6 agent: reads ctx.enhancement.agent instead of
  3 independent env var lookups (#5)
- doc_scraper._run_enhancement: uses agent_client.api_key instead of raw
  os.environ.get() — respects config file api_key (#1)

Important fixes:
- main._handle_analyze_command: populates _fake_args from ExecutionContext
  so --agent and --api-key aren't lost in analyze→enhance path (#6)
- doc_scraper type annotations: replaced forward refs with Any to avoid
  F821 undefined name errors

All changes include RuntimeError fallback for backward compatibility when
ExecutionContext isn't initialized.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: 3 crashes + 1 stub in migrated scrapers found by deep scan

1. github_scraper.py: args.scrape_only and args.enhance_level crash when
   args=None (context path). Guarded with if args and getattr(). Also
   fixed agent fallback to read ctx.enhancement.agent.

2. codebase_scraper.py: args.output and args.skip_api_reference crash in
   summary block when args=None. Replaced with output_dir local var and
   ctx.analysis.skip_api_reference.

3. epub_scraper.py: main() was still a stub ending with "# Rest of main()
   continues..." — restored full extraction + build + enhancement logic
   using ctx values exclusively.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: complete ExecutionContext migration for remaining scrapers

Kimi's Phase 4 scraper migrations + Claude's review fixes.
All 18 scrapers now use context-first pattern with argv fallback.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: Phase 1 — ExecutionContext.get() always returns context (no RuntimeError)

get() now returns a default context instead of raising RuntimeError when
not explicitly initialized. This eliminates the need for try/except
RuntimeError blocks in all 18 scrapers.

Components can always call ExecutionContext.get() safely — it returns
defaults if not initialized, or the explicitly initialized instance.

Updated tests: test_get_returns_defaults_when_not_initialized,
test_reset_clears_instance (no longer expects RuntimeError).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: Phase 2a-c — remove 16 individual scraper CLI commands

Removed individual scraper commands from:
- COMMAND_MODULES in main.py (16 entries: scrape, github, pdf, word,
  epub, video, jupyter, html, openapi, asciidoc, pptx, rss, manpage,
  confluence, notion, chat)
- pyproject.toml entry points (16 skill-seekers-<type> binaries)
- parsers/__init__.py (16 parser registrations)

All source types now accessed via: skill-seekers create <source>
Kept: create, unified, analyze, enhance, package, upload, install,
      install-agent, config, doctor, and utility commands.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: create SkillConverter base class + converter registry

New base interface that all 17 converters will inherit:
- SkillConverter.run() — extract + build (same call for all types)
- SkillConverter.extract() — override in subclass
- SkillConverter.build_skill() — override in subclass
- get_converter(source_type, config) — factory from registry
- CONVERTER_REGISTRY — maps source type → (module, class)

create_command will use get_converter() instead of _call_module().

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: Grand Unification — one command, one interface, direct converters

Complete the Grand Unification refactor: `skill-seekers create` is now
the single entry point for all 18 source types. Individual scraper CLI
commands (scrape, github, pdf, analyze, unified, etc.) are removed.

## Architecture changes

- **18 SkillConverter subclasses**: Every scraper now inherits SkillConverter
  with extract() + build_skill() + SOURCE_TYPE. Factory via get_converter().
- **create_command.py rewritten**: _build_config() constructs config dicts
  from ExecutionContext for each source type. Direct converter.run() calls
  replace the old _build_argv() + sys.argv swap + _call_module() machinery.
- **main.py simplified**: create command bypasses _reconstruct_argv entirely,
  calls CreateCommand(args).execute() directly. analyze/unified commands
  removed (create handles both via auto-detection).
- **CreateParser mode="all"**: Top-level parser now accepts all 120+ flags
  (--browser, --max-pages, --depth, etc.) since create is the only entry.
- **Centralized enhancement**: Runs once in create_command after converter,
  not duplicated in each scraper.
- **MCP tools use converters**: 5 scraping tools call get_converter()
  directly instead of subprocess. Config type auto-detected from keys.
- **ConfigValidator → UniSkillConfigValidator**: Renamed with backward-
  compat alias.
- **Data flow**: AgentClient + LocalSkillEnhancer read ExecutionContext
  first, env vars as fallback.

## What was removed

- main() from all 18 scraper files (~3400 lines)
- 18 CLI commands from COMMAND_MODULES + pyproject.toml entry points
- analyze + unified parsers from parser registry
- _build_argv, _call_module, _SKIP_ARGS, _DEST_TO_FLAG, all _route_*()
- setup_argument_parser, get_configuration, _check_deprecated_flags
- Tests referencing removed commands/functions

## Net impact

51 files changed, ~6000 lines removed. 2996 tests pass, 0 failures.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: review fixes for Grand Unification PR

- Add autouse conftest fixture to reset ExecutionContext singleton between tests
- Replace hardcoded defaults in _is_explicitly_set() with parser-derived defaults
- Upgrade ExecutionContext double-init log from debug to info
- Use logger.exception() in SkillConverter.run() to preserve tracebacks
- Fix docstring "17 types" → "18 types" in skill_converter.py
- DRY up 10 copy-paste help handlers into dict + loop (~100 lines removed)
- Fix 2 CI workflows still referencing removed `skill-seekers scrape` command
- Remove broken pyproject.toml entry point for codebase_scraper:main

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: resolve 12 logic/flow issues found in deep review

Critical fixes:
- UnifiedScraper.run(): replace sys.exit(1) with return 1, add return 0
- doc_scraper: use ExecutionContext.get() when already initialized instead
  of re-calling initialize() which silently discards new config
- unified_scraper: define enhancement_config before try/except to prevent
  UnboundLocalError in LOCAL enhancement timeout read

Important fixes:
- override(): cleaner tuple save/restore for singleton swap
- --agent without --api-key now sets mode="local" so env API key doesn't
  override explicit agent choice
- Remove DeprecationWarning from _reconstruct_argv (fires on every
  non-create command in production)
- Rewrite scrape_generic_tool to use get_converter() instead of subprocess
  calls to removed main() functions
- SkillConverter.run() checks build_skill() return value, returns 1 if False
- estimate_pages_tool uses -m module invocation instead of .py file path

Low-priority fixes:
- get_converter() raises descriptive ValueError on class name typo
- test_default_values: save/clear API key env vars before asserting mode
- test_get_converter_pdf: fix config key "path" → "pdf_path"

3056 passed, 4 failed (pre-existing dep version issues), 32 skipped.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: update MCP server tests to mock converter instead of subprocess

scrape_docs_tool now uses get_converter() + _run_converter() in-process
instead of run_subprocess_with_streaming. Update 4 TestScrapeDocsTool
tests to mock the converter layer instead of the removed subprocess path.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: YusufKaraaslanSpyke <yusuf@spykegames.com>
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-05 23:00:52 +03:00
yusyus
ef14fd4b5d style: auto-format 12 files with ruff format (CI formatting check)
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-02-22 22:32:31 +03:00
yusyus
22bdd4f5f6 fix: sync CLI flags across analyze/pdf/unified commands and fix workflow JSON config
Flag/option synchronization fixes:
- analyze: add --dry-run, --api-key, and all workflow flags (--enhance-workflow,
  --enhance-stage, --var, --workflow-dry-run) via WORKFLOW_ARGUMENTS merge
- pdf: add --api-key to PDF_ARGUMENTS; replace 5 hardcoded add_argument() calls
  in pdf_scraper.py:main() with add_pdf_arguments() to activate all defined args
- unified: add --api-key and --enhance-level (global override) to UNIFIED_ARGUMENTS
  and standalone parser; wire enhance_level CLI override into run() per-source loop
- codebase_scraper: fix --enhance-workflow to use action="append" (was type=str),
  enabling multiple workflow chaining instead of silently dropping all but last

ConfigManager test isolation fix:
- __init__ now reads self.CONFIG_DIR/CONFIG_FILE/PROGRESS_DIR class variables
  instead of calling _get_config_dir()/_get_progress_dir() directly, enabling
  monkeypatching in tests (fixes pre-existing test_add_and_retrieve_github_profile)

Workflow JSON config support in unified_scraper:
- Phase 5 now reads workflows/workflow_stages/workflow_vars from top-level JSON
  config and merges them with CLI args (CLI-first ordering); supports running
  workflows even when unified scraper is called without CLI args (args=None)

Tests: 1,949 passed, 0 failed (added 18 new tests across 3 test files)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-02-22 00:44:02 +03:00
yusyus
3fc4b54164 fix: Remove duplicate import os statements causing UnboundLocalError
## Critical Bugs Fixed

### 1. UnboundLocalError in AI Enhancement Modules (BLOCKING)
**Issue**: Duplicate `import os` statements inside conditional blocks caused
UnboundLocalError when accessing os.environ before the import was reached.

**Files Fixed**:
- src/skill_seekers/cli/guide_enhancer.py (lines 92, 112)
- src/skill_seekers/cli/ai_enhancer.py (line 77)
- src/skill_seekers/cli/config_enhancer.py (line 82)

**Root Cause**: `os` was already imported at file top, but re-imported inside
conditional blocks, creating a local variable scope issue.

**Solution**: Removed duplicate import statements - os is already available
from the top-level import.

**Impact**: Fixed 30 failing guide_enhancer tests

### 2. PDF Scraper Test Expectations (BREAKING CHANGE)
**Issue**: Tests expected old keyword-based categorization behavior, but PR
introduced new single-file strategy for single PDF sources.

**Files Fixed**:
- tests/test_pdf_scraper.py (5 tests updated)

**Tests Updated**:
1. test_categorize_by_keywords
2. test_build_skill_creates_reference_files
3. test_code_blocks_included_in_references
4. test_high_quality_code_preferred
5. test_image_references_in_markdown

**Solution**: Updated test expectations to match new single-file strategy
behavior (single PDF → single category named after PDF basename).

**Impact**: Fixed 5 failing PDF scraper tests

## Test Results

**Before Fixes**: 35 tests failing
**After Fixes**: 130 tests passing, 5 skipped 

### Tested Modules:
-  PDF scraper (18 tests)
-  Guide enhancer (30 tests)
-  All adaptors (82 tests)

## Verification

```bash
pytest tests/test_pdf_scraper.py tests/test_guide_enhancer.py tests/test_adaptors/ -v
# Result: 130 passed, 5 skipped in 1.11s
```

## Notes

The original PR features (GLM-4.7 support + PDF scraper improvements) are
excellent and working correctly. These fixes only address the import scoping
bug introduced during implementation and update tests for the new behavior.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-01-27 21:11:04 +03:00
yusyus
ec3e0bf491 fix: Resolve 61 critical linting errors
Fixed priority linting errors to improve code quality:

Critical Fixes:
- F821 (2 errors): Fixed undefined name 'original_result' in config_enhancer.py
- UP035 (2 errors): Removed deprecated typing.Dict and typing.Type imports
- F401 (27 errors): Removed unused imports and added noqa for availability checks
- E722 (19 errors): Replaced bare 'except:' with 'except Exception:'

Code Quality Improvements:
- SIM201 (4 errors): Simplified 'not x == y' to 'x != y'
- SIM118 (2 errors): Removed unnecessary .keys() in dict iterations
- E741 (4 errors): Renamed ambiguous variable 'l' to 'line'
- I001 (1 error): Sorted imports in test_bootstrap_skill.py

All modified areas tested and passing:
- test_scraper_features.py: 42 passed
- test_integration.py: 51 passed
- test_architecture_scenarios.py: 11 passed
- test_real_world_fastmcp.py: 19 passed (1 skipped)

Remaining linting errors: 249 (mostly code style suggestions like ARG002, F841, SIM102)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-01-17 22:54:40 +03:00
Pablo Estevez
c33c6f9073 change max lenght 2026-01-17 17:48:15 +00:00
Pablo Estevez
5ed767ff9a run ruff 2026-01-17 17:29:21 +00:00
yusyus
50e0bfd19b fix: Update test file imports to use proper package paths
Fixed import errors in test_pdf_scraper.py and test_github_scraper.py:
- Replaced absolute imports with proper package imports
- Changed 'from pdf_scraper import' to 'from skill_seekers.cli.pdf_scraper import'
- Changed 'from github_scraper import' to 'from skill_seekers.cli.github_scraper import'
- Updated all @patch() decorators to use full module paths
- Removed sys.path manipulation workarounds

This completes the fix for import issues discovered during Task 1.2 (Issue #193).

Test Results:
- test_pdf_scraper.py: 18/18 passed 
- test_github_scraper.py: 22/22 passed 
2025-11-29 21:55:46 +03:00
yusyus
7cc3d8b175 Fix all tests: 297/297 passing, 0 skipped, 0 failed
CHANGES:

1. **Fixed 9 PDF Scraper Test Failures:**
   - Added .get() safety for missing page keys (headings, text, code_blocks, images)
   - Supported both 'code_samples' and 'code_blocks' keys for compatibility
   - Fixed extract_pdf() to raise RuntimeError on failure (tests expect exception)
   - Added image saving functionality to _generate_reference_file()
   - Updated all test methods to override skill_dir with temp directory
   - Fixed categorization to handle pre-categorized test data

2. **Fixed 25 MCP Test Skips:**
   - Renamed mcp/ directory to skill_seeker_mcp/ to avoid shadowing external mcp package
   - Updated all imports in tests/test_mcp_server.py
   - Simplified skill_seeker_mcp/server.py import logic (no more shadowing workarounds)
   - Updated tests/test_package_structure.py to reference skill_seeker_mcp

3. **Test Results:**
   -  297 tests passing (100%)
   -  0 tests skipped
   -  0 tests failed
   - All test categories passing:
     * 23 package structure tests
     * 18 PDF scraper tests
     * 67 PDF extractor/advanced tests
     * 25 MCP server tests
     * 164 other core tests

BREAKING CHANGE: MCP server directory renamed from `mcp/` to `skill_seeker_mcp/`

📦 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-10-26 00:51:18 +03:00
yusyus
394eab218e Add PDF Advanced Features (v1.2.0)
Priority 2 & 3 Features Implemented:
- OCR support for scanned PDFs (pytesseract + Pillow)
- Password-protected PDF support
- Complex table extraction
- Parallel page processing (3x faster)
- Intelligent caching (50% faster re-runs)

Testing:
- New test file: test_pdf_advanced_features.py (26 tests)
- Updated test_pdf_extractor.py (23 tests)
- Updated test_pdf_scraper.py (18 tests)
- Total: 49/49 PDF tests passing (100%)
- Overall: 142/142 tests passing (100%)

Documentation:
- Added docs/PDF_ADVANCED_FEATURES.md (580 lines)
- Updated CHANGELOG.md with v1.1.0 and v1.2.0
- Updated README.md version badges and features
- Updated docs/TESTING.md with new test counts

Dependencies:
- Added Pillow==11.0.0
- Added pytesseract==0.3.13

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-10-23 21:43:05 +03:00