- Scan ALL .md files in project (README, docs/, etc.)
- Smart categorization by folder/filename (overview, architecture, guides, etc.)
- Processing depth: surface=raw copy, deep=parse+summarize, full=AI-enhanced
- AI enhancement at level 2+ adds topic extraction and cross-references
- New "Project Documentation" section in SKILL.md with summaries
- Output to references/documentation/ organized by category
- Default ON, use --skip-docs to disable
- Add skip_docs parameter to MCP scrape_codebase_tool
- Add 15 new tests for markdown documentation features
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>